PhyTree visualized on 123+74+420+100k (pid distance)

Description

Environment: Tempest; 32 nodes (768 cores)
Aligner: SmithWaterman
ScoringMatrix: EDNAFULL
GapOpen: -16
GapExt: -4
DistanceType: (1-Normalized Score)
Method: 100k+123 fixed, 74 and 420 varied
WithReverse: 74 reversed, 420 not reversed

Dataset

1) 100k selected from 440k; (id:617~100616)
2) 123 consensus sequence; (id: 420~542)
3) 74 sequences from Gen Bank; (id: 543~616)
4) 420 center sequences; (id: 0~419)

Tree Configuration

New sequences from Gen Bank: Hexagon
Consensus sequence in Haixu 123: Triangle
Center sequences in 420: Rectangle
Root: Sphere

Color Scheme:  Phylogenetic tree generated here

Final Result

1. All shown Plot File in PVIZ format

Screen Shot