PhyTree visualized on 100k+197 (pid distance)

Input

Three MDS results from Manxcat run from Tempest:
1.) Manxcat STRESS all varied DA-SMACOF initial
2.) Manxcat STRESS 197 varied 100K fixed DA-SMACOF initial ChisqPrintConst=1000
3.) Manxcat Sammon 197 varied 100K fixed DA-SMACOF initial chisqprintconst=1000

Description

Aligner: SmithWaterman
ScoringMatrix: EDNAFULL
GapOpen: -16
GapExt: -4
DistanceType: (1-PercentIdentity)

Dataset

1)100k selected from 440k; (id:197~100196)
2) 123 consensus sequence; (id: 0~122)
3) 74 sequences from Gen Bank; (id: 123~196)

Result

1.) Manxcat STRESS all varied DA-SMACOF initial
2.) Manxcat STRESS 197 varied 100K fixed DA-SMACOF initial ChisqPrintConst=1000
3.) Manxcat Sammon 197 varied 100K fixed DA-SMACOF initial chisqprintconst=1000

Screen shot