Wednesday, June 4, 2014

GSF D1/D2 Data: Statistics


  • Original Sequence Counts
    • D1 - 265655
    • Reversed D2 - 265655
  • Paired Unique Sequence Counts
    • D1 - 143223
    • Reversed D2 - 143223
  • Average Lengths
    • Paired Unique D1 - 254
    • Paired Unique Reversed D2 - 247



  • Paired Unique D1 Sequence Length Histogram


  • Paired Unique Reversed D2 Sequence Length Histogram

Sunday, April 27, 2014

GSF R1/R2 Data: R2 Statistics


The following figures present statistics for a selected 100k of  R2 dataset along with the so called "Master" data set of 1020 sequences. 

Summary of Content
  • Histograms
    • SWG Alignment length of R2 with itself (top left)
    • SWG Alignment length of Reversed R2 with Master (top right)
    • SWG PID of R2 with itself (bottom left)
    • SWG PID of Reversed R2 with Master (bottom right)
  • Heatmaps for SWG PID of R2 with itself against alignment length. Also with alignment length cut
  • Heatmap for SWG PID of Reversed R2 with Master against alignment length.
  • Heatmap for SWG alignment length of Reversed R2 with Master against Non-reversed R2 with Master
  • Heatmap for SWG score of Reversed R2 with Master against Non-reversed R2 with Master



  • Histograms

  • R2 SWG PID Vs R2 SWG Align Length -- length cut > 100 on right

  • Reversed R2 100K + Master 1020 SWG PID Vs. Alignment Length

  • 100K+1020 R2 Reversed Alignment Length Vs Alignment Length

  • 100K+1020 R2 Reversed Score Vs Score

GSF R1/R2 Data: Heatmaps for (R1/R2) + "Master" Data - 2



  • R1 100K + Master 1020 SWG PID Vs. Alignment Length


  • Reversed R2 100K + Master 1020 SWG PID Vs. Alignment Length

Saturday, April 19, 2014

GSF R1/R2 Data: Heatmaps for (R1/R2) + "Master" Data

  • 100K+1020 R1 Reversed Alignment Length Vs Alignment Length

  • 100K+1020 R1 Reversed Score Vs Score

  • 100K+1020 R2 Reversed Alignment Length Vs Alignment Length

  • 100K+1020 R2 Reversed Score Vs Score

Tuesday, April 15, 2014

GSF R1/R2 Data: Heatmaps for (R1/R2) Data

Heatmaps for corresponding 100k random samples of GSF data.

  • R2 SWG PID Vs R1 SWG PID



  • R1 SWG PID Vs R1 SWG Align Length -- length cut > 100 on right




  • R2 SWG PID Vs R2 SWG Align Length -- length cut > 100 on right