Heatmaps of Different Distances

• The type of distances
  • PID – #-of-matches / alignment-length-including-gaps-in-the-middle
  • AvgLocal – Score(A,B) / Avg (Score(A’A’), Score(B’,B’)) where A’ and B’ indicate the aligned regions in the original A and B sequences
  • MaxGlobal – Score(A,B) / Max(Score(A,A), Score(B,B))
  • MaxLocal – Score(A,B) / Max(Score(A’A’, B’B’)
  • MinGlobal – Score(A,B) / Min(Score(A,A), Score(B,B))
  • MinLocal – Score(A,B) / Min(Score(A’A’), Score(B’B’))

• Heatmaps for vs PID

AvgLocal Vs PID	MaxGlobal Vs PID
MaxLocal Vs PID	MinGlobal Vs PID
MinLcal Vs PID

• Heatmaps of vs AvgLocal

MaxGlobal Vs AvgLocal	MaxLocal Vs AvgLocal
MinGlobal Vs AvgLocal	MinLocal Vs AvgLocal

• Heatmaps of vs MaxGlobal

MaxLocal Vs MaxGlobal	MinGlobal Vs MaxGlobal
MinLocal Vs MaxGlobal

• Heatmaps of vs MaxLocal

MinGlobal Vs MaxLocal	MinLocal Vs MaxLocal

• Heatmaps of vs MinLocal

MinLocal Vs MinGlobal