GSF R1/R2 Data: R2 Statistics

The following figures present statistics for a selected 100k of  R2 dataset along with the so called "Master" data set of 1020 sequences. 

Summary of Content

• Histograms
• SWG Alignment length of R2 with itself (top left)
• SWG Alignment length of Reversed R2 with Master (top right)
• SWG PID of R2 with itself (bottom left)
• SWG PID of Reversed R2 with Master (bottom right)
• Heatmaps for SWG PID of R2 with itself against alignment length. Also with alignment length cut
• Heatmap for SWG PID of Reversed R2 with Master against alignment length.
• Heatmap for SWG alignment length of Reversed R2 with Master against Non-reversed R2 with Master
• Heatmap for SWG score of Reversed R2 with Master against Non-reversed R2 with Master

• Histograms

• R2 SWG PID Vs R2 SWG Align Length -- length cut > 100 on right

• Reversed R2 100K + Master 1020 SWG PID Vs. Alignment Length

• 100K+1020 R2 Reversed Alignment Length Vs Alignment Length

• 100K+1020 R2 Reversed Score Vs Score

GSF R1/R2 Data: Heatmaps for (R1/R2) + "Master" Data - 2

• R1 100K + Master 1020 SWG PID Vs. Alignment Length

• Reversed R2 100K + Master 1020 SWG PID Vs. Alignment Length

GSF R1/R2 Data: Histograms for (R1/R2) + "Master" Data

• SWG Alignment Lengths

• SWG PID

GSF R1/R2 Data: Heatmaps for (R1/R2) + "Master" Data

• 100K+1020 R1 Reversed Alignment Length Vs Alignment Length

• 100K+1020 R1 Reversed Score Vs Score

• 100K+1020 R2 Reversed Alignment Length Vs Alignment Length

• 100K+1020 R2 Reversed Score Vs Score

GSF R1/R2 Data: Heatmaps for (R1/R2) Data

Heatmaps for corresponding 100k random samples of GSF data.

• R2 SWG PID Vs R1 SWG PID

• R1 SWG PID Vs R1 SWG Align Length -- length cut > 100 on right

• R2 SWG PID Vs R2 SWG Align Length -- length cut > 100 on right